FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53657351
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCGAT185350.017.9200821
ACTGATG177350.017.4118561
GCGCGAT127600.017.1899281
GATGCTA168050.017.1784781
GACTAAC141150.017.1080421
TGACAAC179750.016.8925821
CAATGGA199250.016.847858
ACTGAAC134850.016.8354151
AGTGAGG220100.016.831351
CCGGGAT120700.016.8075771
ATAACGC162800.016.788711
TGAGCCG160900.016.7608031
CGCTATC156900.016.7242531
GAACCTA167900.016.6520041
GATGAAA147150.016.5203721
CTGATAG169250.016.489321
CGACCTT147050.016.4697421
GCCTCTA166650.016.3947851
CTGATCC194800.016.3761981
GGGTTGC160200.016.3608191
Produced by FastQC (version 0.11.5)