FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26222510
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCGAT88800.017.9167691
ACTGATG86700.017.419231
TGACAAC87550.017.2155171
GACTAAC69550.017.1713331
AGTGAGG105900.017.1209091
GATGCTA79600.017.0325371
CAATGGA95350.016.9079768
CCGGGAT58950.016.851081
TGAGCCG74700.016.7713361
GCGCGAT62050.016.7413331
CTGATAG84150.016.5914551
CGCTATC81100.016.543241
TCCCGAT69700.016.540541
GATGAAA70900.016.5026471
CTGATCC100350.016.4883821
GAACCTA80100.016.4851041
ACTGAAC69850.016.4761181
CTCGAAA63300.016.4426351
TGGCTGG83350.016.3631231
ATAACGC81250.016.3014741
Produced by FastQC (version 0.11.5)