FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24010981
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGACCT88850.018.0736871
CCACCTA139850.017.9366471
GAAACTC112750.017.7156811
TACTTGT100800.017.5371741
CTAAGAC79650.017.468041
CGGACTG75200.017.4387131
ACTGATG78300.017.3815211
TCTGGAA85450.017.2889271
GATGCTA86350.017.2845041
TACTTAC120100.017.2802451
GGGCATC85500.017.2551461
TATGCCC71350.017.2451441
CGGAGTC108050.017.2407531
TGAGCAT95100.017.2370011
GTAACTG95350.017.2236441
ATGCGAT62800.017.1922231
CCACTAC74250.017.1712281
TGAGCCG66950.017.1693941
TGCGCAG111800.017.1512051
CCGGTAG97500.017.1032961
Produced by FastQC (version 0.11.5)