FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50566275
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGACC207750.018.0947061
ACCCACT235050.017.9621281
CGCTTCA216450.017.8529471
CGCTGGA231550.017.7317521
CGGACTG157650.017.4479221
CGGAGCT210250.017.355661
TGCGGGT174250.017.305161
GACTAAC137800.017.2552911
ACTGATG151750.017.2539421
CTAATGG196800.017.2272931
GAATGAA147250.017.204761
TGACAAC231950.017.1522331
CCTCTGA189150.017.1226631
GCTCTGT191400.016.9530541
CTCTACG206450.016.8625771
AGTTGGT230200.016.8304771
AGCCTAA176550.016.747741
ATAACGC161600.016.6900181
CTGCCTA168050.016.6627861
GTCGACT102650.016.6298798
Produced by FastQC (version 0.11.5)