FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31078434
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGAAA111950.018.205871
GGAACTT156500.018.2028081
GCGGGTT113800.018.0792871
CTGCCTA161800.018.0329171
TGATTTC156300.017.9210341
CCTACCA184050.017.7380471
GGCGACT101450.017.7201441
GCGCGAT74600.017.5567051
CGCTGGA123150.017.5386771
ATAGACC79700.017.4006631
CGACCTT131450.017.3728281
TACTGTA124850.017.3598164
ACACCCT130150.017.2501471
GGGACCT84800.017.1557181
GAAATGA142200.017.1439061
TTTCCTC181950.017.067381
ATCGAGT105350.017.0160051
CTCAGAA92850.017.0013451
ACTGATG79250.016.974611
GCATGCG123650.016.9590661
Produced by FastQC (version 0.11.5)