FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005407690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31163590
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGAACTT158700.018.2229521
CTCGAAA111000.018.0947531
GCGGGTT112500.018.0331921
CCTACCA180550.017.8091831
TGATTTC159250.017.7918641
CTGCCTA157100.017.7715471
GGCGACT104500.017.7693141
ACACCCT134550.017.722381
CGCTGGA124700.017.533471
CGACCTT131600.017.3822691
CGGAGCT83550.017.3129461
GGGACCT84250.017.2650811
CTCAGAA89900.017.2369441
GCATGCG119200.017.2315851
ATAGACC77650.017.1053411
GAAATGA142000.017.0844381
TACTGTA122150.017.0587984
GCGCGAT72300.017.0149251
ACTGATG78500.017.010261
CAGGACG88200.016.9971968
Produced by FastQC (version 0.11.5)