FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005407702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46259895
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1377490.29777196857018373No Hit
CTCGCTATGTTGCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC555320.1200435063676647No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT493770.10673824486631454No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)