FastQCFastQC Report
Mon 13 May 2024
EGAF00005407719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005407719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61531402
Total Bases9.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT990030.16089833285449925No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC647830.1052844529692335No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)