FastQCFastQC Report
Fri 3 May 2024
EGAF00005408393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005408393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31863076
Total Bases4.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT401850.12611776716096085No Hit
CGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGG380300.11935445278415681No Hit
CTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC338800.10632997266177314No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)