FastQCFastQC Report
Tue 14 May 2024
EGAF00005408450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005408450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45694562
Total Bases6.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC62

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGGC5289341.157542553969551No Hit
CGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCGA2854590.6247110980076798No Hit
CCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCG2563450.5609967330467026No Hit
CCCGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGC2204640.48247316606295515No Hit
AGCGAGAGCTCACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGGCACG2179270.47692108308205255No Hit
GGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGG1580690.3459251890848631No Hit
CCCGGGTGCCCGGGCCCCCCTCGCGGGGGACCGTGCCCCCGCCGCCGGGG1337440.2926912834835795No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1322990.2895289815886626No Hit
GCGAGAGCTCACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGGCACGG1122260.24560034080204118No Hit
CCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGGCA1049480.22967284378390584No Hit
CGAGAGCTCACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGGCACGGG1013530.22180538682042733No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT971990.21271458953912287No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT941210.20597855823631706No Hit
GGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCGACGCTTTCCAAG819720.17939114943261739No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG814350.17821595488758596No Hit
CGACGCTTTCCAAGGCACGGGCCCCTCTCTCGGGGCGAACCCATTCCAGG770780.16868090343004055No Hit
GGACCTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCGCG671580.14697153678811933No Hit
CAGCGAGAGCTCACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGGCAC653720.14306297541488636No Hit
CTCACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGGCACGGGCCCCTC587770.12863018579760105No Hit
CCGGACGCCGCCGGAACCGCGACGCTTTCCAAGGCACGGGCCCCTCTCTC564750.12359238720791327No Hit
CGCGACGCTTTCCAAGGCACGGGCCCCTCTCTCGGGGCGAACCCATTCCA527590.11546012849406456No Hit
GCCGGAACCGCGACGCTTTCCAAGGCACGGGCCCCTCTCTCGGGGCGAAC498260.10904142160285944No Hit
CGGGACCTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCG483900.1058988157059039No Hit
GGGACCTTCCACCCGGCCGGGGCCGACGAACCCCGAACCCCGAGCCGCGC474220.10378040170294224No Hit
CACCGGACGCCGCCGGAACCGCGACGCTTTCCAAGGCACGGGCCCCTCTC467800.10237542051502758No Hit
GGGCGATCCACGGGAAGGGCCCGGCTCGCGTCCAGAGTCGCCGCCGCCGC466200.10202526944015788No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)