FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005408457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005408457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1383660
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26317319.02006273217409No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20844815.064972608877902No Hit
GGGGCGTGTTGCGTGCGGTGTGGTGGTGGGGGAGGAGGAAGGCGGGTCCG26040.18819652226703093No Hit
GGGAGGAGGAAGGCGGGTCCGGAAGGGGAAGGGTGCCGGCGGGGAGAGAG22520.16275674659959818No Hit
GGGGGAGAAGGGTCGGGGCGGCAGGGGCCGGCGGCGGCCGCCGCGGGGCC21560.1558186259630256No Hit
GGCGTGTTGCGTGCGGTGTGGTGGTGGGGGAGGAGGAAGGCGGGTCCGGA20340.1470014309873813No Hit
GGGGGAGCCGCGGGGATCGCCGAGGGCCGGTCGGCCGCCCCGGGTGCCGC20320.14685688680745268No Hit
GGAGGAGGAAGGCGGGTCCGGAAGGGGAAGGGTGCCGGCGGGGAGAGAGG20150.14562826127805964No Hit
GGAGAAGGGTCGGGGCGGCAGGGGCCGGCGGCGGCCGCCGCGGGGCCCCG18190.13146293164505732No Hit
GGGGGCGTGTTGCGTGCGGTGTGGTGGTGGGGGAGGAGGAAGGCGGGTCC17520.12662070161744937No Hit
GGAAGGCGGGTCCGGAAGGGGAAGGGTGCCGGCGGGGAGAGAGGGTCGGG17460.1261870690776636No Hit
CCCGGGTGCCCGGGCCCCCCTCGCGGGGGACCGTGCCCCCGCCGCCGGGG15740.1137562696038044No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14780.10681814896723184No Hit
GCCGGCTCGGGCCGAGTTCCCGTGGCCGCCGCCTGCGGTCCGGGTTCCTC14750.10660133269733893No Hit
GGGGGACCGGCCGCGACTGCGGCGGCGGTGGTGGGGGGAGCCGCGGGGAT14630.10573406761776737No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13910.10053047714033794No Hit
GGGAGAAGGGTCGGGGCGGCAGGGGCCGGCGGCGGCCGCCGCGGGGCCCC13880.10031366087044505No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)