FastQCFastQC Report
Thu 7 Jul 2022
EGAF00005408582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005408582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33502358
Sequences flagged as poor quality0
Sequence length86
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT683520.20402146022079998No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT411620.12286299370330889No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG390130.11644851983254434No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA340850.10173910743834808No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT337620.10077499619579017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)