FastQCFastQC Report
Tue 12 Jul 2022
EGAF00005408584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005408584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25194505
Sequences flagged as poor quality0
Sequence length86
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT539470.21412208733610763No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT334430.13273926199383557No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG302110.11991106790945089No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT265180.10525310975548041No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)