FastQCFastQC Report
Tue 12 Jul 2022
EGAF00005408600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005408600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58346740
Sequences flagged as poor quality0
Sequence length35-86
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1246260.21359548108429022No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT868700.14888578179346437No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT717660.12299915985023327No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG664400.11387097205430843No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN618310.10597164468828936No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT587750.10073399130782629No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)