FastQCFastQC Report
Thu 7 Jul 2022
EGAF00005408601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005408601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46481863
Sequences flagged as poor quality0
Sequence length35-86
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG929760.20002640599839985No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN893150.19215021566583937No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT882870.18993860035257193No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT732100.15750229288357054No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT561020.12069653920713118No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG553850.11915400206743004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)