FastQCFastQC Report
Tue 12 Jul 2022
EGAF00005408614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005408614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40042520
Sequences flagged as poor quality0
Sequence length35-86
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT885350.22110246807643474No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG871280.2175887032084894No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC728260.18187167041434954No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG515800.12881307170477782No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA442480.11050253580443987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)