FastQCFastQC Report
Thu 2 May 2024
EGAF00005408616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005408616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46974124
Total Bases4 Gbp
Sequences flagged as poor quality0
Sequence length35-86
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1255950.26737060599576057No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT969790.20645196065817No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC892500.1899982211483071No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA578970.1232529636955018No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG561560.11954666786335387No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT523610.11146775190528302No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)