FastQCFastQC Report
Thu 7 Jul 2022
EGAF00005409011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29181075
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA940770.32239045340173383No Hit
GGGCCTGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA604850.2072747491310721No Hit
GGGCCAGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA580540.19894400737464263No Hit
GGGCCCGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA348070.11927936170960118No Hit
GGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG314730.1078541486220093No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)