FastQCFastQC Report
Thu 7 Jul 2022
EGAF00005409012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32755259
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCT936410.28588081077301203No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG745850.22770389328931884No Hit
ACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTTCTGGGCT653600.1995404768437337No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)