FastQCFastQC Report
Tue 12 Jul 2022
EGAF00005409015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27880524
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA1111300.39859365627417903No Hit
GGGCCTGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA748890.2686068597562944No Hit
GGGCCAGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA720850.25854965997052276No Hit
GGGCCCGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA437340.1568621880994776No Hit
GGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG396920.14236461265936035No Hit
GGGGCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA381070.13667964059785964No Hit
GGGCTGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA369780.13263021885815346No Hit
GGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGG293210.10516660303802038No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT289760.10392918009718899No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)