FastQCFastQC Report
Thu 7 Jul 2022
EGAF00005409016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26699752
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG684570.2563956399295394No Hit
CCACAGGCTGGGTGGCCCGGAGGCTGGGCTGGGCGAGTATCTCTTCGAAA394330.14769051038376688No Hit
ACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCT287190.10756279683796315No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)