FastQCFastQC Report
Thu 7 Jul 2022
EGAF00005409022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20802223
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG824680.39643839987678237No Hit
ACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCT352800.16959725890833877No Hit
ACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTTCTGGGCT278300.13378377878171963No Hit
TGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGA241160.1159299176823554No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)