FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64923583
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGCAGT1825619228.1195078219882No Hit
CCGAGGCA1805471727.80918144952043No Hit
AGACTTTC1447780222.299758163378016No Hit
TTCTACAG1413487221.771552565113357Illumina DpnII expression Adapter 1 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)