FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60019273
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC1931481332.18101792069357No Hit
TCTATTAG1897147131.608965006957014No Hit
GTGGAGCA1344096622.394416540167022No Hit
AGCTGCGT829202313.815600532182387No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)