FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67624482
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCTCC2054126430.375484428849305No Hit
GATAGGTA1927157728.497929196707194No Hit
TGACTAGT1907237728.203361321126273No Hit
CCGTACAG873926412.92322505331723No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)