FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57989549
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAAGGA1884970032.50533988460576No Hit
TCATCCTT1677254428.923391006196653No Hit
ATTGGACG1123549919.375041181989534No Hit
CAGCTTAC1113180619.196227927208056No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)