FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58918053
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTTCACT1876406031.847725857471904No Hit
TTCGTGAA1509796625.625364775716537No Hit
CGAAGTTG1443737224.504156646181094No Hit
GAGCACGC1061865518.022752720630468No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)