FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60834042
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCAATT2336410638.406302181926364No Hit
GTCTTTGA1586137326.07318612825365No Hit
AGAACGCC1503608024.716555904669296No Hit
CATGGCAG657248310.80395578515069No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)