FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52332219
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCAATT2034997138.88612290642596No Hit
GTCTTTGA1338142925.570154019266795No Hit
AGAACGCC1286482324.582987776612338No Hit
CATGGCAG573599610.960735297694905No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)