FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56367949
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCCCAT1971105534.96855101114287No Hit
TGCGAATG1488100926.399770195647886No Hit
CTTAGTCA1153866120.470251631827157No Hit
ACATTGGC1023722418.161427161382083No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)