FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59717058
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCGAAT1832703730.68978548809287No Hit
AAATCGTC1659559927.790382774717404No Hit
GCGATCGG1491134224.969987637368206No Hit
TGCGATCA988308016.549844099821527No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)