FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51490885
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCGAAT1598740931.04900799432754No Hit
AAATCGTC1410623427.395594385297517No Hit
GCGATCGG1278704724.8336127840879No Hit
TGCGATCA861019516.721784836287043No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)