FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65838140
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTGTC2111377132.06920942784836No Hit
TATCCTGA1661743225.239826033967542No Hit
AGCTGACG1473896822.38667131240342No Hit
GTAAACAT1336796920.30429322578068No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)