FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64070650
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCTCT1810083828.25137250831699No Hit
TTGATGGG1787390027.897172886493273No Hit
GCATGATA1559462024.33972497547629No Hit
AACGACAC1250129219.511729629713447No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)