FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58949121
Sequences flagged as poor quality0
Sequence length8
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGTAA2482077242.10541493909638No Hit
AGCTTCTC1799436730.525250749710075No Hit
GTACAACG932183715.813360474026405No Hit
CCTGCGGT681214511.555973837167139No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)