FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50755548
Sequences flagged as poor quality0
Sequence length8
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGTAA2137223042.108165199989564No Hit
AGCTTCTC1559026030.71636621872352No Hit
GTACAACG782697215.420919108192862No Hit
CCTGCGGT596608611.754549473094054No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)