FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52615046
Sequences flagged as poor quality0
Sequence length8
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGTAA2210867042.01967247163482No Hit
AGCTTCTC1617442130.741056465103156No Hit
GTACAACG815998315.508839429694692No Hit
CCTGCGGT617197211.730431633567326No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)