FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46582851
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT1910748241.018275158813275No Hit
GGGACTAC1291103327.71627910880766No Hit
CATCAGTG865151918.572326112027792No Hit
TCATGCGA591281712.693119620351276No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)