FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54019868
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACGGAT1872015734.6542072261265No Hit
TAGACTCG1553802028.763528263341925No Hit
CCTTTAGA1292907923.933932974438218No Hit
GTCGACTC683261212.648331536093348No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)