FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63792826
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCATCTG1854779229.07504364205467No Hit
GAACATGA1536605724.087437355416736No Hit
ACGGGACT1500564223.522460033358612No Hit
CTTTCGAC1487333523.315058969169982No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)