FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71978602
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGTTTA2425087733.691786622918855No Hit
ACTCAGAC1982745927.546324114491693No Hit
TTAAGCCT1960080427.231431919169534No Hit
CGCTCAGG829946211.530457343419924No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)