FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62468775
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGGAAT2311566437.003549373266885No Hit
TTGTTCTA1458158123.342191358802857No Hit
ACACCGGG1302311920.847405763919653No Hit
CATAATCC1174841118.806853504010604No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)