FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65000272
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGGAAT2414566637.14702301553446No Hit
TTGTTCTA1510228523.234187389246618No Hit
ACACCGGG1354345720.836000501659438No Hit
CATAATCC1220886418.782789093559487No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)