FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62011524
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGCAT2323513737.469063008353096No Hit
CCGGATCC1758499428.35762268961492ABI Dynabead EcoP Oligo (100% over 8bp)
AACTTAGA1313101821.17512544926327No Hit
TTAACGTG806037512.998188852768722No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)