FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63341659
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCCGT2141201633.804002512785466No Hit
ATGATACG1704143526.903992205193113Illumina Single End PCR Primer 1 (100% over 8bp)
CCACAGAA1672399326.402833875885694No Hit
GACTGTTC816421512.889171406135732No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)