FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59182685
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCCGT2014406434.03709040912896No Hit
ATGATACG1607431827.16050817903919Illumina Single End PCR Primer 1 (100% over 8bp)
CCACAGAA1544330926.094302750880598No Hit
GACTGTTC752099412.708098660951256No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)