FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63419246
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGAGT2026468631.95352716744693No Hit
CTCAAGAC1595392825.156287730068566No Hit
AATCTTTG1553510024.495876220288082No Hit
TCGGCCCA1166553218.394308882196423No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)