FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59018847
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAACTCT2093696235.47504409904857No Hit
CTTGGAGA1866228831.62089560983799No Hit
AAGTACTC1559237126.41930805595033No Hit
TCCCTGAG38272266.484752235163116No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)