FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59939120
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGTA2168188236.17317371359473No Hit
AAGCGTGT2058862934.34923469013225No Hit
TGATTAAC1128222118.82280053494279No Hit
CTTGACCG638638810.65479106133023No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)