FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005409854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005409854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58934295
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACACA1688306528.647267266029058No Hit
TTTCTTGT1670750228.349371108961257No Hit
CAAGGGAC1499227925.438972333511412No Hit
ACCTACTG1035144917.56438929149827No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)